{"id":12012,"date":"2023-07-06T14:49:26","date_gmt":"2023-07-06T12:49:26","guid":{"rendered":"https:\/\/new.sano.science\/?post_type=people&p=12012"},"modified":"2024-11-05T10:07:30","modified_gmt":"2024-11-05T09:07:30","slug":"dominika-ciupek","status":"publish","type":"people","link":"https:\/\/sano.science\/people\/dominika-ciupek\/","title":{"rendered":"Dominika Ciupek"},"excerpt":{"rendered":"

PhD Student in Extreme-scale Data and Computing<\/p>\n","protected":false},"featured_media":19859,"template":"","people_teams":[19,34],"class_list":["post-12012","people","type-people","status-publish","has-post-thumbnail","hentry","people_teams-research","people_teams-extreme-scale-data-and-computing"],"yoast_head":"\nDominika Ciupek - Centre for Computational Personalized Medicine<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/sano.science\/people\/dominika-ciupek\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Dominika Ciupek\" \/>\n<meta property=\"og:description\" content=\"PhD Student in Extreme-scale Data and Computing\" \/>\n<meta property=\"og:url\" content=\"https:\/\/sano.science\/people\/dominika-ciupek\/\" \/>\n<meta property=\"og:site_name\" content=\"Centre for Computational Personalized Medicine\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/sano.science\/\" \/>\n<meta property=\"article:modified_time\" content=\"2024-11-05T09:07:30+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/sano.science\/wp-content\/uploads\/2023\/07\/Dominika_Ciupek-1.png\" \/>\n\t<meta property=\"og:image:width\" content=\"1000\" \/>\n\t<meta property=\"og:image:height\" content=\"1000\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/png\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:site\" content=\"@sanoscience\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/sano.science\\\/people\\\/dominika-ciupek\\\/\",\"url\":\"https:\\\/\\\/sano.science\\\/people\\\/dominika-ciupek\\\/\",\"name\":\"Dominika Ciupek - Centre for Computational Personalized Medicine\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/sano.science\\\/#website\"},\"primaryImageOfPage\":{\"@id\":\"https:\\\/\\\/sano.science\\\/people\\\/dominika-ciupek\\\/#primaryimage\"},\"image\":{\"@id\":\"https:\\\/\\\/sano.science\\\/people\\\/dominika-ciupek\\\/#primaryimage\"},\"thumbnailUrl\":\"https:\\\/\\\/sano.science\\\/wp-content\\\/uploads\\\/2023\\\/07\\\/Dominika_Ciupek-1.png\",\"datePublished\":\"2023-07-06T12:49:26+00:00\",\"dateModified\":\"2024-11-05T09:07:30+00:00\",\"breadcrumb\":{\"@id\":\"https:\\\/\\\/sano.science\\\/people\\\/dominika-ciupek\\\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\\\/\\\/sano.science\\\/people\\\/dominika-ciupek\\\/\"]}]},{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/sano.science\\\/people\\\/dominika-ciupek\\\/#primaryimage\",\"url\":\"https:\\\/\\\/sano.science\\\/wp-content\\\/uploads\\\/2023\\\/07\\\/Dominika_Ciupek-1.png\",\"contentUrl\":\"https:\\\/\\\/sano.science\\\/wp-content\\\/uploads\\\/2023\\\/07\\\/Dominika_Ciupek-1.png\",\"width\":1000,\"height\":1000,\"caption\":\"Ciupek Dominika\"},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\\\/\\\/sano.science\\\/people\\\/dominika-ciupek\\\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\\\/\\\/sano.science\\\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"People\",\"item\":\"https:\\\/\\\/sano.science\\\/people\\\/\"},{\"@type\":\"ListItem\",\"position\":3,\"name\":\"Research\",\"item\":\"https:\\\/\\\/sano.science\\\/people-teams\\\/research\\\/\"},{\"@type\":\"ListItem\",\"position\":4,\"name\":\"Dominika Ciupek\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\\\/\\\/sano.science\\\/#website\",\"url\":\"https:\\\/\\\/sano.science\\\/\",\"name\":\"Centre for Computational Personalized Medicine\",\"description\":\"Sano \u2013 Centre for Computational Medicine\",\"publisher\":{\"@id\":\"https:\\\/\\\/sano.science\\\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\\\/\\\/sano.science\\\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"},{\"@type\":\"Organization\",\"@id\":\"https:\\\/\\\/sano.science\\\/#organization\",\"name\":\"Sano \u2013 Centre for Computational Medicine\",\"alternateName\":\"Sano\",\"url\":\"https:\\\/\\\/sano.science\\\/\",\"logo\":{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/sano.science\\\/#\\\/schema\\\/logo\\\/image\\\/\",\"url\":\"https:\\\/\\\/sano.science\\\/wp-content\\\/uploads\\\/2024\\\/05\\\/logo_sano_podstawowe.png\",\"contentUrl\":\"https:\\\/\\\/sano.science\\\/wp-content\\\/uploads\\\/2024\\\/05\\\/logo_sano_podstawowe.png\",\"width\":700,\"height\":265,\"caption\":\"Sano \u2013 Centre for Computational Medicine\"},\"image\":{\"@id\":\"https:\\\/\\\/sano.science\\\/#\\\/schema\\\/logo\\\/image\\\/\"},\"sameAs\":[\"https:\\\/\\\/www.facebook.com\\\/sano.science\\\/\",\"https:\\\/\\\/x.com\\\/sanoscience\",\"https:\\\/\\\/www.linkedin.com\\\/company\\\/sanoscience\\\/\",\"https:\\\/\\\/www.youtube.com\\\/channel\\\/UCDZ_8TcjMWUG2ZcgKKgfpwQ\",\"https:\\\/\\\/bsky.app\\\/profile\\\/sanoscience.bsky.social\"]}]}<\/script>\n<!-- \/ Yoast SEO Premium plugin. -->","yoast_head_json":{"title":"Dominika Ciupek - Centre for Computational Personalized Medicine","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/sano.science\/people\/dominika-ciupek\/","og_locale":"en_US","og_type":"article","og_title":"Dominika Ciupek","og_description":"PhD Student in Extreme-scale Data and Computing","og_url":"https:\/\/sano.science\/people\/dominika-ciupek\/","og_site_name":"Centre for Computational Personalized Medicine","article_publisher":"https:\/\/www.facebook.com\/sano.science\/","article_modified_time":"2024-11-05T09:07:30+00:00","og_image":[{"width":1000,"height":1000,"url":"https:\/\/sano.science\/wp-content\/uploads\/2023\/07\/Dominika_Ciupek-1.png","type":"image\/png"}],"twitter_card":"summary_large_image","twitter_site":"@sanoscience","twitter_misc":{"Est. reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/sano.science\/people\/dominika-ciupek\/","url":"https:\/\/sano.science\/people\/dominika-ciupek\/","name":"Dominika Ciupek - Centre for Computational Personalized Medicine","isPartOf":{"@id":"https:\/\/sano.science\/#website"},"primaryImageOfPage":{"@id":"https:\/\/sano.science\/people\/dominika-ciupek\/#primaryimage"},"image":{"@id":"https:\/\/sano.science\/people\/dominika-ciupek\/#primaryimage"},"thumbnailUrl":"https:\/\/sano.science\/wp-content\/uploads\/2023\/07\/Dominika_Ciupek-1.png","datePublished":"2023-07-06T12:49:26+00:00","dateModified":"2024-11-05T09:07:30+00:00","breadcrumb":{"@id":"https:\/\/sano.science\/people\/dominika-ciupek\/#breadcrumb"},"inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/sano.science\/people\/dominika-ciupek\/"]}]},{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/sano.science\/people\/dominika-ciupek\/#primaryimage","url":"https:\/\/sano.science\/wp-content\/uploads\/2023\/07\/Dominika_Ciupek-1.png","contentUrl":"https:\/\/sano.science\/wp-content\/uploads\/2023\/07\/Dominika_Ciupek-1.png","width":1000,"height":1000,"caption":"Ciupek Dominika"},{"@type":"BreadcrumbList","@id":"https:\/\/sano.science\/people\/dominika-ciupek\/#breadcrumb","itemListElement":[{"@type":"ListItem","position":1,"name":"Home","item":"https:\/\/sano.science\/"},{"@type":"ListItem","position":2,"name":"People","item":"https:\/\/sano.science\/people\/"},{"@type":"ListItem","position":3,"name":"Research","item":"https:\/\/sano.science\/people-teams\/research\/"},{"@type":"ListItem","position":4,"name":"Dominika Ciupek"}]},{"@type":"WebSite","@id":"https:\/\/sano.science\/#website","url":"https:\/\/sano.science\/","name":"Centre for Computational Personalized Medicine","description":"Sano \u2013 Centre for Computational Medicine","publisher":{"@id":"https:\/\/sano.science\/#organization"},"potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/sano.science\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-US"},{"@type":"Organization","@id":"https:\/\/sano.science\/#organization","name":"Sano \u2013 Centre for Computational Medicine","alternateName":"Sano","url":"https:\/\/sano.science\/","logo":{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/sano.science\/#\/schema\/logo\/image\/","url":"https:\/\/sano.science\/wp-content\/uploads\/2024\/05\/logo_sano_podstawowe.png","contentUrl":"https:\/\/sano.science\/wp-content\/uploads\/2024\/05\/logo_sano_podstawowe.png","width":700,"height":265,"caption":"Sano \u2013 Centre for Computational Medicine"},"image":{"@id":"https:\/\/sano.science\/#\/schema\/logo\/image\/"},"sameAs":["https:\/\/www.facebook.com\/sano.science\/","https:\/\/x.com\/sanoscience","https:\/\/www.linkedin.com\/company\/sanoscience\/","https:\/\/www.youtube.com\/channel\/UCDZ_8TcjMWUG2ZcgKKgfpwQ","https:\/\/bsky.app\/profile\/sanoscience.bsky.social"]}]}},"acf":[],"meta_data":{"description":"<p>Dominika earned a Master’s degree in Biomedical Engineering at the AGH University of Science and Technology in Krak\u00f3w. She is currently pursuing her PhD at Sano as part of the Extreme-scale Data and Computing team on the topic of Application of Federated Learning to Medical Data at Large Scale. Dominika specializes in medical imaging of the brain, especially in diffusion-weighted magnetic resonance imaging. So far, her main fields of research have been biophysical multi-compartment models and tractographic algorithms. Privately, she is a fan of psychological thrillers and documentaries about serial killers. She also spends her free time sketching and digital drawing.<\/p>\n","email":"","social_media":[{"icon":{"ID":11990,"id":11990,"title":"research gate","filename":"research-gate.svg","filesize":14281,"url":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","link":"https:\/\/sano.science\/people\/maciej-malawski\/research-gate\/","alt":"","author":"5","description":"","caption":"","name":"research-gate","status":"inherit","uploaded_to":531,"date":"2023-07-06 11:18:50","modified":"2023-07-06 11:18:50","menu_order":0,"mime_type":"image\/svg+xml","type":"image","subtype":"svg+xml","icon":"https:\/\/sano.science\/wp-includes\/images\/media\/default.png","width":1,"height":1,"sizes":{"thumbnail":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","thumbnail-width":150,"thumbnail-height":150,"medium":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","medium-width":300,"medium-height":300,"medium_large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","medium_large-width":768,"medium_large-height":1,"large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","large-width":1024,"large-height":1024,"1536x1536":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","1536x1536-width":1,"1536x1536-height":1,"2048x2048":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","2048x2048-width":1,"2048x2048-height":1}},"link":"https:\/\/www.researchgate.net\/profile\/Dominika-Ciupek","name":"ResearchGate"},{"icon":{"ID":11992,"id":11992,"title":"orcid","filename":"orcid.svg","filesize":15590,"url":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/orcid.svg","link":"https:\/\/sano.science\/people\/maciej-malawski\/orcid\/","alt":"","author":"5","description":"","caption":"","name":"orcid","status":"inherit","uploaded_to":531,"date":"2023-07-06 11:21:29","modified":"2023-07-06 11:21:29","menu_order":0,"mime_type":"image\/svg+xml","type":"image","subtype":"svg+xml","icon":"https:\/\/sano.science\/wp-includes\/images\/media\/default.png","width":1,"height":1,"sizes":{"thumbnail":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/orcid.svg","thumbnail-width":150,"thumbnail-height":150,"medium":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/orcid.svg","medium-width":300,"medium-height":300,"medium_large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/orcid.svg","medium_large-width":768,"medium_large-height":1,"large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/orcid.svg","large-width":1024,"large-height":1024,"1536x1536":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/orcid.svg","1536x1536-width":1,"1536x1536-height":1,"2048x2048":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/orcid.svg","2048x2048-width":1,"2048x2048-height":1}},"link":"https:\/\/orcid.org\/0000-0002-1411-3060","name":"ORCID"}],"tabs":false,"quote":"","position_with_team":{"text_before_link":"PhD Student in","link_text":"Extreme-scale Data and Computing","text_after_link":"","link":"https:\/\/sano.science\/research-teams\/extreme-scale-data-and-computing\/"},"publications":[{"ID":15016,"post_author":"5","post_date":"2024-01-18 09:42:19","post_date_gmt":"2024-01-18 08:42:19","post_content":"<!-- wp:heading {\"epAnimationGeneratedClass\":\"edplus_anim-1A9myv\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<h2 class=\"wp-block-heading eplus-wrapper\">Gabriel Girard, Jonathan Rafael-Pati\u00f1o, Rapha\u00ebl Truffet, Dogu Baran Aydogan, Nagesh Adluru, Veena A. Nair, Vivek Prabhakaran, Barbara B. Bendlin, Andrew L. Alexander, Sara Bosticardo, Ilaria Gabusi, Mario Ocampo-Pineda, Matteo Battocchio, Zuzana Piskorova, Pietro Bontempi, Simona Schiavi, Alessandro Daducci, Aleksandra Stafiej, Dominika Ciupek, Fabian Bogusz, Tomasz Pieciak et al.<\/h2>\n<!-- \/wp:heading -->\n\n<!-- wp:spacer {\"height\":\"50px\",\"epAnimationGeneratedClass\":\"edplus_anim-nnlFdY\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-XFZwcA\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p class=\" eplus-wrapper\">Estimating structural connectivity from diffusion-weighted magnetic resonance imaging is a challenging task, partly due to the presence of false-positive connections and the misestimation of connection weights. Building on previous efforts, the MICCAI-CDMRI Diffusion-Simulated Connectivity (DiSCo) challenge was carried out to evaluate state-of-the-art connectivity methods using novel large-scale numerical phantoms. The diffusion signal for the phantoms was obtained from\u00a0Monte Carlo simulations. The results of the challenge suggest that methods selected by the 14 teams participating in the challenge can provide high correlations between estimated and ground-truth connectivity weights, in complex numerical environments. Additionally, the methods used by the participating teams were able to accurately identify the binary connectivity of the numerical dataset. However, specific false positive and\u00a0false negative\u00a0connections were consistently estimated across all methods. Although the challenge dataset doesn\u2019t capture the complexity of a real brain, it provided unique data with known macrostructure and microstructure ground-truth properties to facilitate the development of connectivity estimation methods.<\/p>\n<!-- \/wp:paragraph -->\n\n<!-- wp:spacer {\"height\":\"50px\",\"epAnimationGeneratedClass\":\"edplus_anim-nnlFdY\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:acf\/button {\"id\":\"block_65a8e4579e1b0\",\"name\":\"acf\/button\",\"data\":{\"title\":\"READ HERE\",\"_title\":\"field_61d40397c2f0a\",\"button_type\":\"link\",\"_button_type\":\"field_63bbde3b8f0d0\",\"url\":\"https:\/\/www.sciencedirect.com\/science\/article\/pii\/S1053811923003828\",\"_url\":\"field_61d4039bc2f0b\",\"button_style\":\"primary\",\"_button_style\":\"field_63872d045d0f0\",\"target\":\"_blank\",\"_target\":\"field_63872c705d0ef\",\"button_extra_classes\":\"\",\"_button_extra_classes\":\"field_642beab6a97de\"},\"align\":\"\",\"mode\":\"edit\"} \/-->","post_title":"Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge","post_excerpt":"In: NeuroImage, 2023.","post_status":"publish","comment_status":"closed","ping_status":"closed","post_password":"","post_name":"tractography-passes-the-test-results-from-the-diffusion-simulated-connectivity-disco-challenge","to_ping":"","pinged":"","post_modified":"2024-01-18 09:42:19","post_modified_gmt":"2024-01-18 08:42:19","post_content_filtered":"","post_parent":0,"guid":"https:\/\/sano.science\/?post_type=research&p=15016","menu_order":24,"post_type":"research","post_mime_type":"","comment_count":"0","filter":"raw"}]},"_links":{"self":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people\/12012","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people"}],"about":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/types\/people"}],"version-history":[{"count":3,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people\/12012\/revisions"}],"predecessor-version":[{"id":15302,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people\/12012\/revisions\/15302"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/media\/19859"}],"wp:attachment":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/media?parent=12012"}],"wp:term":[{"taxonomy":"people_teams","embeddable":true,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people_teams?post=12012"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}