{"id":12015,"date":"2023-07-06T14:51:15","date_gmt":"2023-07-06T12:51:15","guid":{"rendered":"https:\/\/new.sano.science\/?post_type=people&p=12015"},"modified":"2026-03-16T10:07:28","modified_gmt":"2026-03-16T09:07:28","slug":"jan-meizner","status":"publish","type":"people","link":"https:\/\/sano.science\/people\/jan-meizner\/","title":{"rendered":"Jan Meizner"},"excerpt":{"rendered":"

PhD Student in Extreme-scale Data and Computing<\/p>\n","protected":false},"featured_media":28650,"template":"","people_teams":[19,34,37],"class_list":["post-12015","people","type-people","status-publish","has-post-thumbnail","hentry","people_teams-research","people_teams-extreme-scale-data-and-computing","people_teams-scientific-programmers"],"yoast_head":"\nJan Meizner - Centre for Computational Personalized Medicine<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/sano.science\/people\/jan-meizner\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Jan Meizner\" \/>\n<meta property=\"og:description\" content=\"PhD Student in Extreme-scale Data and Computing\" \/>\n<meta property=\"og:url\" content=\"https:\/\/sano.science\/people\/jan-meizner\/\" \/>\n<meta property=\"og:site_name\" content=\"Centre for Computational Personalized Medicine\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/sano.science\/\" \/>\n<meta property=\"article:modified_time\" content=\"2026-03-16T09:07:28+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/sano.science\/wp-content\/uploads\/2023\/07\/Jan-Meizner-.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"650\" \/>\n\t<meta property=\"og:image:height\" content=\"650\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:site\" content=\"@sanoscience\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/sano.science\\\/people\\\/jan-meizner\\\/\",\"url\":\"https:\\\/\\\/sano.science\\\/people\\\/jan-meizner\\\/\",\"name\":\"Jan Meizner - 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Since then he has been working at ACC Cyfronet AGH on many EU and national projects involving a wide range of subjects, including computational medicine. His work focuses on IT security, cloud and HPC infrastructures, as well as building software for such infrastructures. In Sano he was involved in the operations of IT systems, as well as a range of IT security tasks, including identity management and data security as the Technical Manager. Later he shifted his focus back to science by becoming a PhD student in the Extreme-scale Data and Computing Team as well as Senior Scientific Programmer in the ISW Project. Currently he is leading the work carried out by Sano as part of the VHTNet consortium developing the Virtual Human Twins platform.<\/p>\n","email":"","social_media":[{"icon":{"ID":11994,"id":11994,"title":"linkedin","filename":"linkedin.svg","filesize":914,"url":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/linkedin.svg","link":"https:\/\/sano.science\/people\/maciej-malawski\/linkedin-2\/","alt":"","author":"5","description":"","caption":"","name":"linkedin-2","status":"inherit","uploaded_to":531,"date":"2023-07-06 11:24:13","modified":"2023-07-06 11:24:13","menu_order":0,"mime_type":"image\/svg+xml","type":"image","subtype":"svg+xml","icon":"https:\/\/sano.science\/wp-includes\/images\/media\/default.png","width":1,"height":1,"sizes":{"thumbnail":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/linkedin.svg","thumbnail-width":150,"thumbnail-height":150,"medium":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/linkedin.svg","medium-width":300,"medium-height":300,"medium_large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/linkedin.svg","medium_large-width":768,"medium_large-height":1,"large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/linkedin.svg","large-width":1024,"large-height":1024,"1536x1536":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/linkedin.svg","1536x1536-width":1,"1536x1536-height":1,"2048x2048":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/linkedin.svg","2048x2048-width":1,"2048x2048-height":1}},"link":"https:\/\/www.linkedin.com\/in\/jan-meizner-37993a26\/","name":"LinkedIn"}],"tabs":false,"quote":"","position_with_team":{"text_before_link":"Senior Scientific Programmer, PhD Student in","link_text":"Extreme-scale Data and Computing","text_after_link":"","link":"https:\/\/sano.science\/research-teams\/extreme-scale-data-and-computing\/"},"publications":[{"ID":15019,"post_author":"5","post_date":"2024-01-18 10:05:36","post_date_gmt":"2024-01-18 09:05:36","post_content":"<!-- wp:heading {\"epAnimationGeneratedClass\":\"edplus_anim-AM6OG4\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<h2 class=\"wp-block-heading eplus-wrapper\">Marek Kasztelnik, Piotr Nowakowski, Jan Meizner, Maciej Malawski, Adam Nowak, Krzysztof Gadek, Karol Zajac, Antonino Amedeo La Mattina & Marian Bubak<\/h2>\n<!-- \/wp:heading -->\n\n<!-- wp:spacer {\"height\":\"50px\",\"epAnimationGeneratedClass\":\"edplus_anim-2j4SBu\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-nW3zsl\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p class=\" eplus-wrapper\">The Digital Twin paradigm in medical care has recently gained popularity among proponents of translational medicine, to enable clinicians to make informed choices regarding treatment on the basis of digital simulations. In this paper we present an overview of functional and non-functional requirements related to specific IT solutions which enable such simulations - including the need to ensure repeatability and traceability of results - and propose an architecture that satisfies these requirements. We then describe a computational platform that facilitates digital twin simulations, and validate our approach in the context of a real-life medical use case: the BoneStrength application.<\/p>\n<!-- \/wp:paragraph -->\n\n<!-- wp:spacer {\"height\":\"50px\",\"epAnimationGeneratedClass\":\"edplus_anim-2j4SBu\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:acf\/button {\"id\":\"block_65a8e9d073e43\",\"name\":\"acf\/button\",\"data\":{\"title\":\"READ HERE\",\"_title\":\"field_61d40397c2f0a\",\"button_type\":\"link\",\"_button_type\":\"field_63bbde3b8f0d0\",\"url\":\"https:\/\/link.springer.com\/chapter\/10.1007\/978-3-031-36021-3_2\",\"_url\":\"field_61d4039bc2f0b\",\"button_style\":\"primary\",\"_button_style\":\"field_63872d045d0f0\",\"target\":\"_blank\",\"_target\":\"field_63872c705d0ef\",\"button_extra_classes\":\"\",\"_button_extra_classes\":\"field_642beab6a97de\"},\"align\":\"\",\"mode\":\"edit\"} \/-->","post_title":"Digital twin simulation development and execution on HPC infrastructures","post_excerpt":"In: ICCS 2023: Computational Science \u2013 ICCS 2023.","post_status":"publish","comment_status":"closed","ping_status":"closed","post_password":"","post_name":"digital-twin-simulation-development-and-execution-on-hpc-infrastructures","to_ping":"","pinged":"","post_modified":"2024-01-18 10:05:37","post_modified_gmt":"2024-01-18 09:05:37","post_content_filtered":"","post_parent":0,"guid":"https:\/\/sano.science\/?post_type=research&p=15019","menu_order":23,"post_type":"research","post_mime_type":"","comment_count":"0","filter":"raw"},{"ID":28622,"post_author":"8","post_date":"2026-01-31 20:27:39","post_date_gmt":"2026-01-31 19:27:39","post_content":"<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-2Pi2d5\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p class=\" eplus-wrapper\">J. Meizner, P. Kica, S. Licho\u0142ai, M. Malawski<br><\/p>\n<!-- \/wp:paragraph -->\n\n<!-- wp:spacer {\"height\":\"20px\",\"epAnimationGeneratedClass\":\"edplus_anim-1zPQcu\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:acf\/button {\"id\":\"block_697e57c573194\",\"name\":\"acf\/button\",\"data\":{\"title\":\"Read\/Download\",\"_title\":\"field_61d40397c2f0a\",\"button_type\":\"link\",\"_button_type\":\"field_63bbde3b8f0d0\",\"url\":\"https:\/\/events.plgrid.pl\/event\/70\/attachments\/143\/364\/PROCEEDINGS%202025_na%20www%20bez%20notatek.pdf\",\"_url\":\"field_61d4039bc2f0b\",\"button_style\":\"primary\",\"_button_style\":\"field_63872d045d0f0\",\"target\":\"_self\",\"_target\":\"field_63872c705d0ef\",\"button_extra_classes\":\"\",\"_button_extra_classes\":\"field_642beab6a97de\"},\"align\":\"\",\"mode\":\"edit\"} \/-->\n\n<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-kY6bTP\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p class=\" eplus-wrapper\"><\/p>\n<!-- \/wp:paragraph -->","post_title":"Analysis of Index Access Pattern in STAR RNA-seq Aligner","post_excerpt":"Conference abstract: Seventeenth ACC Cyfronet AGH HPC Users\u2019 Conference (KUKDM 2025), 2025","post_status":"publish","comment_status":"closed","ping_status":"closed","post_password":"","post_name":"analysis-of-index-access-pattern-in-star-rna-seq-aligner","to_ping":"","pinged":"","post_modified":"2026-02-06 11:42:54","post_modified_gmt":"2026-02-06 10:42:54","post_content_filtered":"","post_parent":0,"guid":"https:\/\/sano.science\/?post_type=research&p=28622","menu_order":0,"post_type":"research","post_mime_type":"","comment_count":"0","filter":"raw"},{"ID":14952,"post_author":"8","post_date":"2024-01-16 13:45:59","post_date_gmt":"2024-01-16 12:45:59","post_content":"<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-w6ZXkN\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p id=\"h-\" class=\" eplus-wrapper\">Piotr Nowakowski, Marian Bubak, Krzysztof G\u0105dek, \u200bMarek Kasztelnik, Maciej Malawski, Jan Meizner, \u200bAdam Nowak, Piotr Po\u0142e\u0107, Karol Zaj\u0105c, Taras Zhyhulin\u200b<\/p>\n<!-- \/wp:paragraph -->\n\n<!-- wp:spacer {\"height\":\"50px\",\"epAnimationGeneratedClass\":\"edplus_anim-zQZ8SH\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:acf\/button {\"id\":\"block_65a67a733ad67\",\"name\":\"acf\/button\",\"data\":{\"title\":\"READ HERE\",\"_title\":\"field_61d40397c2f0a\",\"button_type\":\"link\",\"_button_type\":\"field_63bbde3b8f0d0\",\"url\":\"https:\/\/www.cyfronet.pl\/zalacznik\/9789\",\"_url\":\"field_61d4039bc2f0b\",\"button_style\":\"primary\",\"_button_style\":\"field_63872d045d0f0\",\"target\":\"_blank\",\"_target\":\"field_63872c705d0ef\",\"button_extra_classes\":\"\",\"_button_extra_classes\":\"field_642beab6a97de\"},\"align\":\"\",\"mode\":\"edit\"} \/-->","post_title":"Leveraging ACC Resources for Medical Research","post_excerpt":"In: KUKDM 2023, 2023.","post_status":"publish","comment_status":"closed","ping_status":"closed","post_password":"","post_name":"leveraging-acc-resources-for-medical-research","to_ping":"","pinged":"","post_modified":"2026-01-31 19:31:07","post_modified_gmt":"2026-01-31 18:31:07","post_content_filtered":"","post_parent":0,"guid":"https:\/\/sano.science\/?post_type=research&p=14952","menu_order":26,"post_type":"research","post_mime_type":"","comment_count":"0","filter":"raw"},{"ID":12582,"post_author":"5","post_date":"2023-07-12 15:39:45","post_date_gmt":"2023-07-12 13:39:45","post_content":"<!-- wp:heading {\"epAnimationGeneratedClass\":\"edplus_anim-J5dqk1\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<h2 class=\"wp-block-heading eplus-wrapper\">Nowakowski, Piotr; Bubak, Marian; Barty\u0144ski, Tomasz; Guba\u0142a, Tomasz; Harce\u017clak, Daniel; Kasztelnik, Marek; Malawski, Maciej; Meizner, Jan<\/h2>\n<!-- \/wp:heading -->\n\n<!-- wp:spacer {\"height\":\"50px\",\"epAnimationGeneratedClass\":\"edplus_anim-s1TArR\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-a3R9xa\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p class=\" eplus-wrapper\">As virtualization technologies mature and become ever more widespread, cloud computing has emerged as a promising paradigm for e-science. In order to facilitate successful application of cloud computing in scientific research \u2013 particularly in a domain as security-minded as medical research \u2013 several technical challenges need to be addressed. This paper reports on the successful deployment and utilization of a cloud computing platform for the Virtual Physiological Human (VPH) research community, originating in the VPH-Share project and continuing beyond the end of this project. The platform tackles technical issues involved in porting existing desktop applications to the cloud environment and constitutes a uniform research space where application services can be developed, stored, accessed and shared using a variety of computational infrastructures. The paper also presents examples of application workflows which make use of the presented infrastructure \u2013 both internal and external to the VPH community.<\/p>\n<!-- \/wp:paragraph -->\n\n<!-- wp:spacer {\"height\":\"50px\",\"epAnimationGeneratedClass\":\"edplus_anim-12Pdvl\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:acf\/button {\"id\":\"block_64aeacf54484e\",\"name\":\"acf\/button\",\"data\":{\"title\":\"READ HERE\",\"_title\":\"field_61d40397c2f0a\",\"button_type\":\"link\",\"_button_type\":\"field_63bbde3b8f0d0\",\"url\":\"https:\/\/dx.doi.org\/10.1016\/j.jocs.2017.06.012\",\"_url\":\"field_61d4039bc2f0b\",\"button_style\":\"primary\",\"_button_style\":\"field_63872d045d0f0\",\"target\":\"_blank\",\"_target\":\"field_63872c705d0ef\",\"button_extra_classes\":\"\",\"_button_extra_classes\":\"field_642beab6a97de\"},\"align\":\"\",\"mode\":\"edit\"} \/-->","post_title":"Cloud computing infrastructure for the VPH community\u00a0","post_excerpt":"In: Journal of Computational Science, vol. 24, pp. 169\u2013179, 2018, ISSN: 18777503.","post_status":"publish","comment_status":"closed","ping_status":"closed","post_password":"","post_name":"cloud-computing-infrastructure-for-the-vph-community","to_ping":"","pinged":"","post_modified":"2024-01-05 13:58:08","post_modified_gmt":"2024-01-05 12:58:08","post_content_filtered":"","post_parent":0,"guid":"https:\/\/new.sano.science\/?post_type=research&p=12582","menu_order":96,"post_type":"research","post_mime_type":"","comment_count":"0","filter":"raw"},{"ID":12568,"post_author":"5","post_date":"2023-07-12 14:05:16","post_date_gmt":"2023-07-12 12:05:16","post_content":"<!-- wp:heading {\"epAnimationGeneratedClass\":\"edplus_anim-KUhwAl\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<h2 class=\"wp-block-heading eplus-wrapper\">Bubak, M; Czechowicz, K; Guba\u0142a, T; Hose, D R; Kasztelnik, M; Malawski, M; Meizner, J; Nowakowski, P; Wood, S<\/h2>\n<!-- \/wp:heading -->\n\n<!-- wp:spacer {\"height\":\"50px\",\"epAnimationGeneratedClass\":\"edplus_anim-EBnA15\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-N4wtZJ\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p class=\" eplus-wrapper\">The goal of this paper is to present a dedicated high-performance computing (HPC) infrastructure which is used in the development of a so-called reduced-order model (ROM) for simulating the outcomes of interventional procedures which are contemplated in the treatment of valvular heart conditions. Following a brief introduction to the problem, the paper presents the design of a model execution environment, in which representative cases can be simulated and the parameters of the ROM fine-tuned to enable subsequent deployment of a decision support system without further need for HPC. The presentation of the system is followed by information concerning its use in processing specific patient cases in the context of the EurValve international collaboration.<\/p>\n<!-- \/wp:paragraph -->\n\n<!-- wp:spacer {\"height\":\"50px\",\"epAnimationGeneratedClass\":\"edplus_anim-I1PAzT\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:acf\/button {\"id\":\"block_64ae96e2d28c3\",\"name\":\"acf\/button\",\"data\":{\"title\":\"READ HERE\",\"_title\":\"field_61d40397c2f0a\",\"button_type\":\"link\",\"_button_type\":\"field_63bbde3b8f0d0\",\"url\":\"https:\/\/royalsocietypublishing.org\/doi\/10.1098\/rsfs.2020.0006\",\"_url\":\"field_61d4039bc2f0b\",\"button_style\":\"primary\",\"_button_style\":\"field_63872d045d0f0\",\"target\":\"_blank\",\"_target\":\"field_63872c705d0ef\",\"button_extra_classes\":\"\",\"_button_extra_classes\":\"field_642beab6a97de\"},\"align\":\"\",\"mode\":\"edit\"} \/-->","post_title":"The EurValve model execution environment\u00a0","post_excerpt":"In: Interface Focus, vol. 11, no. 1, pp. 20200006, 2021, ISSN: 2042-8898.","post_status":"publish","comment_status":"closed","ping_status":"closed","post_password":"","post_name":"the-eurvalve-model-execution-environment","to_ping":"","pinged":"","post_modified":"2024-01-05 14:00:04","post_modified_gmt":"2024-01-05 13:00:04","post_content_filtered":"","post_parent":0,"guid":"https:\/\/new.sano.science\/?post_type=research&p=12568","menu_order":79,"post_type":"research","post_mime_type":"","comment_count":"0","filter":"raw"}]},"_links":{"self":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people\/12015","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people"}],"about":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/types\/people"}],"version-history":[{"count":8,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people\/12015\/revisions"}],"predecessor-version":[{"id":29899,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people\/12015\/revisions\/29899"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/media\/28650"}],"wp:attachment":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/media?parent=12015"}],"wp:term":[{"taxonomy":"people_teams","embeddable":true,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people_teams?post=12015"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}