{"id":15540,"date":"2024-02-27T15:58:43","date_gmt":"2024-02-27T14:58:43","guid":{"rendered":"https:\/\/sano.science\/?post_type=people&p=15540"},"modified":"2026-02-20T11:37:28","modified_gmt":"2026-02-20T10:37:28","slug":"jakub-wojciechowski","status":"publish","type":"people","link":"https:\/\/sano.science\/people\/jakub-wojciechowski\/","title":{"rendered":"Jakub Wojciechowski"},"excerpt":{"rendered":"

Postdoctoral Researcher<\/p>\n","protected":false},"featured_media":28375,"template":"","people_teams":[19,114],"class_list":["post-15540","people","type-people","status-publish","has-post-thumbnail","hentry","people_teams-research","people_teams-structural-and-functional-genomics-group"],"yoast_head":"\nJakub Wojciechowski - Centre for Computational Personalized Medicine<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/sano.science\/people\/jakub-wojciechowski\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Jakub Wojciechowski\" \/>\n<meta property=\"og:description\" content=\"Postdoctoral Researcher\" \/>\n<meta property=\"og:url\" content=\"https:\/\/sano.science\/people\/jakub-wojciechowski\/\" \/>\n<meta property=\"og:site_name\" content=\"Centre for Computational Personalized Medicine\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/sano.science\/\" \/>\n<meta property=\"article:modified_time\" content=\"2026-02-20T10:37:28+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/sano.science\/wp-content\/uploads\/2024\/02\/Jakub-Wojciechowski.png\" \/>\n\t<meta property=\"og:image:width\" content=\"650\" \/>\n\t<meta property=\"og:image:height\" content=\"650\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/png\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:site\" content=\"@sanoscience\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/sano.science\\\/people\\\/jakub-wojciechowski\\\/\",\"url\":\"https:\\\/\\\/sano.science\\\/people\\\/jakub-wojciechowski\\\/\",\"name\":\"Jakub Wojciechowski - 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During his Ph.D. he developed bioinformatic tools for the identification of amyloidogenic regions in proteins as well as the first method for the prediction of amyloid interactions. He also studied amyloids in the human microbiome and their connection to the onset of neurodegenerative disorders such as Alzheimer\u2019s and Parkinson\u2019s diseases. His research involves the development and application of state-of-the-art bioinformatic algorithms on large data sets, as well as the use of Machine learning approaches for biological big data<\/p>\n","email":"","position_with_team":{"text_before_link":"Postdoctoral Researcher in","link_text":"Structural and Functional Genomics Group","text_after_link":"","link":"https:\/\/sano.science\/research-teams\/structural-and-functional-genomics\/"},"social_media":[{"icon":{"ID":11986,"id":11986,"title":"google","filename":"google.svg","filesize":14070,"url":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/google.svg","link":"https:\/\/sano.science\/people\/maciej-malawski\/google\/","alt":"","author":"5","description":"","caption":"","name":"google","status":"inherit","uploaded_to":531,"date":"2023-07-06 10:59:21","modified":"2023-07-06 10:59:21","menu_order":0,"mime_type":"image\/svg+xml","type":"image","subtype":"svg+xml","icon":"https:\/\/sano.science\/wp-includes\/images\/media\/default.png","width":1,"height":1,"sizes":{"thumbnail":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/google.svg","thumbnail-width":150,"thumbnail-height":150,"medium":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/google.svg","medium-width":300,"medium-height":300,"medium_large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/google.svg","medium_large-width":768,"medium_large-height":1,"large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/google.svg","large-width":1024,"large-height":1024,"1536x1536":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/google.svg","1536x1536-width":1,"1536x1536-height":1,"2048x2048":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/google.svg","2048x2048-width":1,"2048x2048-height":1}},"link":"https:\/\/scholar.google.com\/citations?user=On4My_gAAAAJ&hl=pl&oi=ao","name":"Google Scholar"},{"icon":{"ID":11990,"id":11990,"title":"research gate","filename":"research-gate.svg","filesize":14281,"url":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","link":"https:\/\/sano.science\/people\/maciej-malawski\/research-gate\/","alt":"","author":"5","description":"","caption":"","name":"research-gate","status":"inherit","uploaded_to":531,"date":"2023-07-06 11:18:50","modified":"2023-07-06 11:18:50","menu_order":0,"mime_type":"image\/svg+xml","type":"image","subtype":"svg+xml","icon":"https:\/\/sano.science\/wp-includes\/images\/media\/default.png","width":1,"height":1,"sizes":{"thumbnail":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","thumbnail-width":150,"thumbnail-height":150,"medium":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","medium-width":300,"medium-height":300,"medium_large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","medium_large-width":768,"medium_large-height":1,"large":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","large-width":1024,"large-height":1024,"1536x1536":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","1536x1536-width":1,"1536x1536-height":1,"2048x2048":"https:\/\/sano.science\/wp-content\/uploads\/2023\/05\/research-gate.svg","2048x2048-width":1,"2048x2048-height":1}},"link":"https:\/\/www.researchgate.net\/profile\/Jakub-Wojciechowski-7","name":"Resarch Gate"}],"tabs":false,"quote":"","publications":[{"ID":20667,"post_author":"8","post_date":"2025-01-10 11:32:20","post_date_gmt":"2025-01-10 10:32:20","post_content":"<!-- wp:spacer {\"height\":\"40px\",\"epAnimationGeneratedClass\":\"edplus_anim-fO7P2F\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:heading {\"epAnimationGeneratedClass\":\"edplus_anim-nIXyqz\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<h2 class=\"wp-block-heading eplus-wrapper\" id=\"h-guerlais-v-allouch-n-moseman-e-a-wojciechowska-a-w-wojciechowski-j-w-marcelino-i\">Guerlais, V., Allouch, N., Moseman, E. A., Wojciechowska, A. W., Wojciechowski, J. W., Marcelino, I<\/h2>\n<!-- \/wp:heading -->\n\n<!-- wp:spacer {\"height\":\"40px\",\"epAnimationGeneratedClass\":\"edplus_anim-fO7P2F\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-0BKizZ\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p class=\" eplus-wrapper\">The free-living amoeba <em>Naegleria fowleri<\/em> (NF) causes a rare but deadly parasitic meningoencephalitis (PAM) in humans, with no effective treatments available. The molecular mechanisms behind NF pathogenesis and the host brain response remain unclear. To investigate natural virulence variation, two new environmental NF isolates (NF45 and NF1) were purified and tested for in vivo virulence in mice. NF45 exhibited high virulence (NF45_HV) compared to the lower virulence NF1 (NF1_LV), based on amoeba growth and mouse survival rates. RNA-seq analysis of infected mouse brains revealed differential gene expression patterns: NF1_LV upregulated genes related to translational proteins and protein modification, while NF45_HV modulated genes associated with DNA metabolism and cytoskeletal proteins. The virulence factor Cathepsin B was upregulated in NF1_LV but downregulated in NF45_HV. Host response analysis indicated stronger immune activation in NF1_LV infections, including blood-brain barrier leakage, immune cell recruitment, cytokine release (IL-6, IFN-\u0194, TNF\u03b1), and neuronal damage. Neuromotor-related genes (Adam22, Cacnb4, Zic1 for NF1_LV and ChAt for NF45_HV) were linked to PAM symptoms like muscle weakness and seizures. The study highlights the varying virulence of environmental NF strains and their distinct effects on gene expression during infection, providing the first comprehensive insight into the molecular mechanisms of PAM pathogenesis. Targeting both the parasite and the host could be a promising approach for future PAM therapies.<\/p>\n<!-- \/wp:paragraph -->\n\n<!-- wp:spacer {\"height\":\"40px\",\"epAnimationGeneratedClass\":\"edplus_anim-fO7P2F\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-f828Q4\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p class=\" eplus-wrapper\"><strong>DOI<\/strong>: https:\/\/doi.org\/10.3389\/fcimb.2024.1490280<\/p>\n<!-- \/wp:paragraph -->\n\n<!-- wp:paragraph {\"epAnimationGeneratedClass\":\"edplus_anim-bG62C7\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<p class=\" eplus-wrapper\"><strong>Keywords:<\/strong> Naegleria fowleri, virulence phenotypes, mouse brain infection, RNA-seq analysis, neuroinflammation, host-parasite interaction, neurodegeneration, differentially expressed genes (DEGs)<\/p>\n<!-- \/wp:paragraph -->\n\n<!-- wp:spacer {\"height\":\"40px\",\"epAnimationGeneratedClass\":\"edplus_anim-fO7P2F\",\"epGeneratedClass\":\"eplus-wrapper\"} -->\n<div style=\"height:40px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n<!-- \/wp:spacer -->\n\n<!-- wp:acf\/button {\"id\":\"block_6780f71be7fb8\",\"name\":\"acf\/button\",\"data\":{\"title\":\"READ HERE\",\"_title\":\"field_61d40397c2f0a\",\"button_type\":\"link\",\"_button_type\":\"field_63bbde3b8f0d0\",\"url\":\"https:\/\/www.frontiersin.org\/journals\/cellular-and-infection-microbiology\/articles\/10.3389\/fcimb.2024.1490280\/full\",\"_url\":\"field_61d4039bc2f0b\",\"button_style\":\"primary\",\"_button_style\":\"field_63872d045d0f0\",\"target\":\"_self\",\"_target\":\"field_63872c705d0ef\",\"button_extra_classes\":\"\",\"_button_extra_classes\":\"field_642beab6a97de\"},\"align\":\"\",\"mode\":\"edit\"} \/-->","post_title":"Transcriptomic profiling of \u201cbrain-eating amoeba\u201d Naegleria fowleri infection in mice: the host and the protozoa perspectives","post_excerpt":"Journal paper in: www.frontiersin.org, 2024","post_status":"publish","comment_status":"closed","ping_status":"closed","post_password":"","post_name":"transcriptomic-profiling-of-brain-eating-amoeba-naegleria-fowleri-infection-in-mice-the-host-and-the-protozoa-perspectives","to_ping":"","pinged":"","post_modified":"2025-01-13 13:36:45","post_modified_gmt":"2025-01-13 12:36:45","post_content_filtered":"","post_parent":0,"guid":"https:\/\/sano.science\/?post_type=research&p=20667","menu_order":0,"post_type":"research","post_mime_type":"","comment_count":"0","filter":"raw"}]},"_links":{"self":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people\/15540","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people"}],"about":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/types\/people"}],"version-history":[{"count":6,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people\/15540\/revisions"}],"predecessor-version":[{"id":29244,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people\/15540\/revisions\/29244"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/media\/28375"}],"wp:attachment":[{"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/media?parent=15540"}],"wp:term":[{"taxonomy":"people_teams","embeddable":true,"href":"https:\/\/sano.science\/index.php\/wp-json\/wp\/v2\/people_teams?post=15540"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}