{"id":14331,"date":"2023-11-18T09:00:00","date_gmt":"2023-11-18T08:00:00","guid":{"rendered":"https:\/\/sano.science\/?p=14331"},"modified":"2025-03-17T14:51:16","modified_gmt":"2025-03-17T13:51:16","slug":"transcriptomics-atlas-pipeline-cloud-vs-hpc-at-sc23-in-denver","status":"publish","type":"post","link":"https:\/\/sano.science\/transcriptomics-atlas-pipeline-cloud-vs-hpc-at-sc23-in-denver\/","title":{"rendered":"\u201cTranscriptomics Atlas Pipeline: Cloud vs HPC\u201d at SC23 in Denver"},"content":{"rendered":"\n<p class=\" eplus-wrapper\">The goal of the Transcriptomics Atlas project is to create a database of analysed RNA sequences corresponding to given tissue and organ types based on the data from public repositories and to make it available for researchers.&nbsp;<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n\n\n\n<p class=\" eplus-wrapper\">Dr. Maciej Malawski and Piotr Kica, members of the Extreme-Scale Data and Computing team presented the preliminary results of the experimental evaluation of the pipeline in the AWS cloud and the comparison of the results with the traditional execution on the HPC cluster at WORKS 2023*, 18th Workshop on Workflows in Support of Large-Scale Science in Denver, US, on 12 November.&nbsp;&nbsp;<\/p>\n\n\n\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n\n\n\n<p class=\" eplus-wrapper\">The presentation was an important step in summarising the preliminary results and planning the next stages of the project.<\/p>\n\n\n\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n\n\n\n<p class=\" eplus-wrapper\">*WORKS 2023 is an event connected with the International Conference for High Performance Computing, Networking, Storage, and Analysis (SC23).&nbsp;<\/p>\n\n\n\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n\n\n\n<h4 class=\"wp-block-heading eplus-wrapper\" id=\"h-more-information-about-sc23-https-sc23-supercomputing-org-nbsp\">More information about SC23: <a href=\"https:\/\/sc23.supercomputing.org\/\">https:\/\/sc23.supercomputing.org\/<\/a>&nbsp;<\/h4>\n\n\n\n<div style=\"height:100px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n\n\n\n<div class=\"wp-block-group eplus-wrapper\"><div class=\"wp-block-group__inner-container is-layout-constrained wp-block-group-is-layout-constrained\">\n    <div class=\"grid-of-images grid grid-cols-1 md:grid-cols-2 gap-24px lg:gap-32px auto-rows-auto\">\n\n        \n            \n    \n    <a\n            data-fslightbox=\"gallery\"\n            class=\"lightbox-image rounded-20px overflow-hidden\"\n            href=\"https:\/\/sano.science\/wp-content\/uploads\/2023\/11\/20231112_161410-scaled.jpg\"\n            title=\"Press to open photo preview\"\n            aria-label=\"Press to open photo preview\"\n    >\n\n        \n    \n       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technologies.","author":5,"featured_media":14339,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"inline_featured_image":false,"editor_plus_post_options":"{}","editor_plus_copied_stylings":"{}","footnotes":""},"categories":[123],"tags":[124,125],"class_list":["post-14331","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-neardata","tag-neardata","tag-sano-projects"],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v27.3 (Yoast SEO v27.3) - https:\/\/yoast.com\/product\/yoast-seo-premium-wordpress\/ -->\n<title>\u201cTranscriptomics Atlas Pipeline: Cloud vs HPC\u201d at SC23 in Denver - Centre for Computational Personalized Medicine<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" 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class=\" eplus-wrapper\">The goal of the Transcriptomics Atlas project is to create a database of analysed RNA sequences corresponding to given tissue and organ types based on the data from public repositories and to make it available for researchers.&nbsp;<\/p>\n","innerContent":["\n<p class=\" eplus-wrapper\">The goal of the Transcriptomics Atlas project is to create a database of analysed RNA sequences corresponding to given tissue and organ types based on the data from public repositories and to make it available for researchers.&nbsp;<\/p>\n"]},{"blockName":"core\/spacer","attrs":{"height":"10px","epAnimationGeneratedClass":"edplus_anim-BGgiMj","epGeneratedClass":"eplus-wrapper"},"innerBlocks":[],"innerHTML":"\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n","innerContent":["\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n"]},{"blockName":"core\/paragraph","attrs":{"epAnimationGeneratedClass":"edplus_anim-pzLhDd","epGeneratedClass":"eplus-wrapper"},"innerBlocks":[],"innerHTML":"\n<p class=\" eplus-wrapper\">Dr. Maciej Malawski and Piotr Kica, members of the Extreme-Scale Data and Computing team presented the preliminary results of the experimental evaluation of the pipeline in the AWS cloud and the comparison of the results with the traditional execution on the HPC cluster at WORKS 2023*, 18th Workshop on Workflows in Support of Large-Scale Science in Denver, US, on 12 November.&nbsp;&nbsp;<\/p>\n","innerContent":["\n<p class=\" eplus-wrapper\">Dr. Maciej Malawski and Piotr Kica, members of the Extreme-Scale Data and Computing team presented the preliminary results of the experimental evaluation of the pipeline in the AWS cloud and the comparison of the results with the traditional execution on the HPC cluster at WORKS 2023*, 18th Workshop on Workflows in Support of Large-Scale Science in Denver, US, on 12 November.&nbsp;&nbsp;<\/p>\n"]},{"blockName":"core\/spacer","attrs":{"height":"10px","epAnimationGeneratedClass":"edplus_anim-BGgiMj","epGeneratedClass":"eplus-wrapper"},"innerBlocks":[],"innerHTML":"\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n","innerContent":["\n<div style=\"height:10px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n"]},{"blockName":"core\/paragraph","attrs":{"epAnimationGeneratedClass":"edplus_anim-d7Bvff","epGeneratedClass":"eplus-wrapper"},"innerBlocks":[],"innerHTML":"\n<p class=\" eplus-wrapper\">The presentation was an important step in summarising the preliminary results and planning the next stages of the project.<\/p>\n","innerContent":["\n<p class=\" eplus-wrapper\">The presentation was an important step in summarising the preliminary results and planning the next stages of the project.<\/p>\n"]},{"blockName":"core\/spacer","attrs":{"height":"20px","epAnimationGeneratedClass":"edplus_anim-BGgiMj","epGeneratedClass":"eplus-wrapper"},"innerBlocks":[],"innerHTML":"\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n","innerContent":["\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n"]},{"blockName":"core\/paragraph","attrs":{"epAnimationGeneratedClass":"edplus_anim-aGap6l","epGeneratedClass":"eplus-wrapper"},"innerBlocks":[],"innerHTML":"\n<p class=\" eplus-wrapper\">*WORKS 2023 is an event connected with the International Conference for High Performance Computing, Networking, Storage, and Analysis (SC23).&nbsp;<\/p>\n","innerContent":["\n<p class=\" eplus-wrapper\">*WORKS 2023 is an event connected with the International Conference for High Performance Computing, Networking, Storage, and Analysis (SC23).&nbsp;<\/p>\n"]},{"blockName":"core\/spacer","attrs":{"height":"50px","epAnimationGeneratedClass":"edplus_anim-tnWvb4","epGeneratedClass":"eplus-wrapper"},"innerBlocks":[],"innerHTML":"\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n","innerContent":["\n<div style=\"height:50px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n"]},{"blockName":"core\/heading","attrs":{"level":4,"epAnimationGeneratedClass":"edplus_anim-MQhgEe","epGeneratedClass":"eplus-wrapper"},"innerBlocks":[],"innerHTML":"\n<h4 class=\"wp-block-heading eplus-wrapper\" id=\"h-more-information-about-sc23-https-sc23-supercomputing-org-nbsp\">More information about SC23: <a href=\"https:\/\/sc23.supercomputing.org\/\">https:\/\/sc23.supercomputing.org\/<\/a>&nbsp;<\/h4>\n","innerContent":["\n<h4 class=\"wp-block-heading eplus-wrapper\" id=\"h-more-information-about-sc23-https-sc23-supercomputing-org-nbsp\">More information about SC23: <a href=\"https:\/\/sc23.supercomputing.org\/\">https:\/\/sc23.supercomputing.org\/<\/a>&nbsp;<\/h4>\n"]},{"blockName":"core\/spacer","attrs":{"epAnimationGeneratedClass":"edplus_anim-0wcocc","epGeneratedClass":"eplus-wrapper"},"innerBlocks":[],"innerHTML":"\n<div style=\"height:100px\" aria-hidden=\"true\" class=\"wp-block-spacer eplus-wrapper\"><\/div>\n","innerContent":["\n<div style=\"height:100px\" aria-hidden=\"true\" class=\"wp-block-spacer 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